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Remodeling of the circRNA Landscape in Myocardial Infarction Integrates Nuclear Regulation, DNA Damage Response, and Cardiomyocyte Structural Pathways

  • Rudaynah Alali
  • , Naif Khalid Alqannas
  • , Alawi H. Habara
  • , Mohammed Almansori
  • , Ali Alsaeed
  • , Chittibabu Vatte
  • , Cyril Cyrus
  • , Safi G. Alqatari
  • , Hassan Albisher
  • , Mustafa H. Al-ajwad
  • , Faisal S. Alshahrani
  • , Moyad M. Almuslim
  • , Morten T. Venø
  • , Brendan J. Keating
  • , Amein K. Al-Ali*
  • *Corresponding author for this work
  • Ministry of Health, Saudi Arabia
  • Imam Abdulrahman Bin Faisal University
  • Omics ApS
  • New York University

Research output: Contribution to journalArticlepeer-review

Abstract

Plasma circular RNAs (circRNAs) are stable RNA molecules found in blood, which makes them potential noninvasive biomarkers for acute myocardial infarction (MI). The aim of this study was to describe the plasma circRNA profile in patients with acute MI and to identify circRNA markers that may help detect heart injury and reflect the biological processes involved. We compared plasma samples from patients with acute MI and healthy controls using total RNA sequencing with unique molecular identifiers (UMIs). After sequencing, reads were processed through quality control, alignment, duplicate removal, and circRNA detection. Differential expression was analyzed after adjusting for age, sex, smoking, and technical factors. Several circRNAs were significantly different between MI cases and controls and were able to separate the two groups in principal component and receiver operating characteristic analyses. Among the most increased circRNAs were hsa-PASK_0004, hsa-STXBP3_0002, hsa-RCAN3_0002, and hsa-RANBP9_0044, while hsa-HIF1A_0002, hsa-SUZ12_0049, hsa-PNRC1_0001, and hsa-RAB2A_0002 were decreased. Several candidates showed AUC values above 0.7. Pathway analysis linked the host genes of these circRNAs to inflammation, platelet activation, coagulation, and cardiomyocyte stress responses. Overall, these findings suggest that circulating circRNAs may serve as useful blood-based markers of MI and provide insight into the molecular changes that accompany acute MI.

Original languageEnglish
Article number578
JournalBiomolecules
Volume16
Issue number4
DOIs
StatePublished - Apr 2026

Keywords

  • biomarker
  • circRNA
  • inflammation
  • MI
  • RNASeq

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